Last updated on 2026-10-20 07:51:26 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.26 | 5.28 | 58.99 | 64.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.26 | 3.47 | 42.12 | 45.59 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.26 | 42.76 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.26 | 46.65 | OK | |||
| r-devel-windows-x86_64 | 1.0.26 | 6.00 | 95.00 | 101.00 | OK | |
| r-patched-linux-x86_64 | 1.0.26 | 4.81 | 51.86 | 56.67 | OK | |
| r-release-linux-x86_64 | 1.0.26 | 4.01 | 51.46 | 55.47 | OK | |
| r-release-macos-arm64 | 1.0.26 | 1.00 | 44.00 | 45.00 | OK | |
| r-release-macos-x86_64 | 1.0.26 | 3.00 | 97.00 | 100.00 | OK | |
| r-release-windows-x86_64 | 1.0.26 | 6.00 | 64.00 | 70.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.26 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.26 | 4.00 | 114.00 | 118.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.26 | 8.00 | 93.00 | 101.00 | OK |
Version: 1.0.26
Check: tests
Result: ERROR
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(pmparser)
>
> test_check('pmparser')
Saving _problems/test_modify_pubmed_db_dup-53.R
Saving _problems/test_modify_pubmed_db_dup-69.R
Saving _problems/test_modify_pubmed_db_std-24.R
Saving _problems/test_modify_pubmed_db_std-44.R
[ FAIL 4 | WARN 4 | SKIP 4 | PASS 67 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test_get_citation.R:4:3', 'test_get_citation.R:13:3',
'test_get_pubmed_files.R:7:3', 'test_get_pubmed_files.R:20:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_modify_pubmed_db_dup.R:51:3'): modifyPubmedDb create is unique ──
Error in `open.connection(con, "rb")`: cannot open the connection to 'https://api.figshare.com/v2/collections/4586573/articles'
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:51:3
2. └─pmparser::getCitation(...)
3. └─pmparser:::getCitationInfo()
4. ├─data.table::data.table(jsonlite::fromJSON(iciteUrl))
5. └─jsonlite::fromJSON(iciteUrl)
6. └─jsonlite:::parse_and_simplify(...)
7. └─jsonlite:::parseJSON(txt, bigint_as_char)
8. └─jsonlite:::parse_con(txt, bigint_as_char)
9. ├─base::open(con, "rb")
10. └─base::open.connection(con, "rb")
── Error ('test_modify_pubmed_db_dup.R:67:3'): modifyPubmedDb update is unique ──
Error in `open.connection(con, "rb")`: cannot open the connection to 'https://api.figshare.com/v2/collections/4586573/articles'
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:67:3
2. └─pmparser::getCitation(...)
3. └─pmparser:::getCitationInfo()
4. ├─data.table::data.table(jsonlite::fromJSON(iciteUrl))
5. └─jsonlite::fromJSON(iciteUrl)
6. └─jsonlite:::parse_and_simplify(...)
7. └─jsonlite:::parseJSON(txt, bigint_as_char)
8. └─jsonlite:::parse_con(txt, bigint_as_char)
9. ├─base::open(con, "rb")
10. └─base::open.connection(con, "rb")
── Error ('test_modify_pubmed_db_std.R:22:3'): modifyPubmedDb create matches standard ──
Error in `open.connection(con, "rb")`: cannot open the connection to 'https://api.figshare.com/v2/collections/4586573/articles'
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:22:3
2. └─pmparser::getCitation(...)
3. └─pmparser:::getCitationInfo()
4. ├─data.table::data.table(jsonlite::fromJSON(iciteUrl))
5. └─jsonlite::fromJSON(iciteUrl)
6. └─jsonlite:::parse_and_simplify(...)
7. └─jsonlite:::parseJSON(txt, bigint_as_char)
8. └─jsonlite:::parse_con(txt, bigint_as_char)
9. ├─base::open(con, "rb")
10. └─base::open.connection(con, "rb")
── Error ('test_modify_pubmed_db_std.R:42:3'): modifyPubmedDb update matches standard ──
Error in `open.connection(con, "rb")`: cannot open the connection to 'https://api.figshare.com/v2/collections/4586573/articles'
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:42:3
2. └─pmparser::getCitation(...)
3. └─pmparser:::getCitationInfo()
4. ├─data.table::data.table(jsonlite::fromJSON(iciteUrl))
5. └─jsonlite::fromJSON(iciteUrl)
6. └─jsonlite:::parse_and_simplify(...)
7. └─jsonlite:::parseJSON(txt, bigint_as_char)
8. └─jsonlite:::parse_con(txt, bigint_as_char)
9. ├─base::open(con, "rb")
10. └─base::open.connection(con, "rb")
[ FAIL 4 | WARN 4 | SKIP 4 | PASS 67 ]
Error:
! Test failures.
Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-release-windows-x86_64